Summary

Follow-up to merged PR #10. Addresses all 5 cleanup items from Protocol-zero-0's post-merge review (2026-05-16) plus a couple of adversarial nits we caught on second pass.

Reviewer's note: "第 5 条做完，前 4 条会顺带暴露并修掉" — building verify_acceptance.sh indeed surfaced the stale commit fields and the non-deterministic delta, so this PR closes everything in one pass.

Reviewer checklist

• 实现科学机会评估排序与自动实验闭环模块 #1 missing scripts/demo_agenda_loop.py — new thin wrapper that delegates to build_agenda_loop_acceptance.main(). Inserts repo root onto sys.path so the documented one-liner python scripts/demo_agenda_loop.py works directly (not just with -m).
• Add opportunity triage queue #2 stale commit: ef15797 in all 6 acceptance bundles — re-ran every builder; all 6 now carry commit: 44ae888a0c1c…. Added scripts/build_manuscript_venue_routing_umbrella.py so the umbrella JSON (issue [Epic] Manuscript Venue Routing + Multi-Template Pipeline (会议路由 + 多模板论文管线) #11) is regenerated deterministically from sub-bundles + git rev-parse HEAD instead of being hand-written.
• fix: Debug startup resilience #3 false byte-reproducibility claim on result_packet_sha256 — added _strip_non_deterministic() covering wallclock-derived metrics (latency_ms_*, peak_memory_mb, latency_speedup_x), DB auto-increment ids, and abs paths. Renamed the JSON field to result_packet_structural_sha256 so the claim is honest. Also applied the same strip to experiment.delta so the bundle JSON itself is byte-stable across runs (was still leaking latency_speedup_x after the rename — caught on second pass).
• [Feature Request] Closing the loop: Integrating Automated Manuscript Drafting, AI Peer-Review, and Publication Pipeline #4 agents/venues.yaml → manuscript_venues/venues_v1.yaml + stale venue names — fixed every reference in README.md, docs/top_venue_manuscript_chain.md, and the diagram block. The 6 actually registered venues are now consistently named everywhere: iclr2026, neurips2024, icml2024, acl_arr, cvpr2024, arxiv_plain. `grep -rn 'agents/venues.yaml'` returns 0 hits; `grep -rn 'neurips2025|emnlp2025|iccv2025'` returns 0 hits.
• Add SciForge benchmark pipeline and safe RL review pass #5 scripts/verify_acceptance.sh — one-liner that any contributor can run from a clean venv. Wipes scratch DBs, runs all 5 builders + the umbrella, parses each artifact JSON, cross-checks the commit field against git rev-parse HEAD, and prints PASS — 6/6 acceptance bundles regenerated at commit <sha> only when everything succeeds. Uses set -Eeuo pipefail so any builder failure short-circuits with a clear message.

Verification (re-run on the head commit of this PR)

```
$ bash scripts/verify_acceptance.sh
[verify] regenerating d1 template router (python -m scripts.build_d1_acceptance)
[verify] regenerating d2 top-venue adapters (python -m scripts.build_d2_acceptance)
[verify] regenerating d3 format linter (python -m scripts.build_d3_acceptance)
[verify] regenerating d4 manuscript routing (python -m scripts.build_d4_acceptance)
[verify] regenerating agenda loop (#9) (python -m scripts.build_agenda_loop_acceptance)
[verify] regenerating umbrella (#11) (python -m scripts.build_manuscript_venue_routing_umbrella)
[verify] verifying 6 acceptance bundles exist + parse + match HEAD
ok artifacts/agenda_loop_acceptance.json (commit=44ae888a0c1c)
ok artifacts/d1_template_router_acceptance.json (commit=44ae888a0c1c)
ok artifacts/d2_top_venue_adapters_acceptance.json (commit=44ae888a0c1c)
ok artifacts/d3_format_linter_acceptance.json (commit=44ae888a0c1c)
ok artifacts/d4_manuscript_routing_api_acceptance.json (commit=44ae888a0c1c)
ok artifacts/manuscript_venue_routing_acceptance.json (commit=44ae888a0c1c)

================================================================
PASS — 6/6 acceptance bundles regenerated at commit 44ae888

```

Epic-scope tests (touched paths only):

```
$ python3 -m pytest tests/test_top_venue_adapters.py tests/test_venue_router.py \
tests/test_format_linter.py tests/test_manuscript_routes.py \
tests/test_template_adapter.py tests/test_venue_router_tiebreak.py -q
50 passed, 6 subtests passed in 0.65s
```

Reproducibility proof (two consecutive runs of the agenda loop builder):

```
run1.experiment.delta = {"approximation_l2_distance": 10.13387978273153, "relative_error": 0.7670742721257483}
run2.experiment.delta = {"approximation_l2_distance": 10.13387978273153, "relative_error": 0.7670742721257483}
run1.result_packet_structural_sha256 = 087c1d13348aefbad55a921f3380984de3719cfc581ff300fbe6adf6ab6f67e8
run2.result_packet_structural_sha256 = 087c1d13348aefbad55a921f3380984de3719cfc581ff300fbe6adf6ab6f67e8
```

Documented one-liner now works directly (no -m needed):

```
$ python scripts/demo_agenda_loop.py
[ok] wrote artifacts/agenda_loop_acceptance.json
selection_id=1 run_id=2 gate=block bundle_id=None review_id=1 plan_id=1
```

Files

New (3)

• `scripts/demo_agenda_loop.py` — thin wrapper (item 实现科学机会评估排序与自动实验闭环模块 #1)
• `scripts/build_manuscript_venue_routing_umbrella.py` — deterministic umbrella regenerator (item Add opportunity triage queue #2)
• `scripts/verify_acceptance.sh` — one-shot recipe (item Add SciForge benchmark pipeline and safe RL review pass #5)

Modified (11)

• `scripts/build_agenda_loop_acceptance.py` — structural sha + delta strip (item fix: Debug startup resilience #3)
• `README.md`, `docs/top_venue_manuscript_chain.md`, `docs/agenda_loop_clean_checkout_repro.md` — path/venue/field-name fixes (item [Feature Request] Closing the loop: Integrating Automated Manuscript Drafting, AI Peer-Review, and Publication Pipeline #4 + post-rename cleanup)
• `artifacts/{agenda_loop,d1_template_router,d2_top_venue_adapters,d3_format_linter,d4_manuscript_routing_api,manuscript_venue_routing,review_1}_acceptance.json` — auto-regenerated by `verify_acceptance.sh` (item Add opportunity triage queue #2)

Test plan

• `bash scripts/verify_acceptance.sh` → PASS
• Epic-scope pytest suite (6 files) → 50 passed
• `python scripts/demo_agenda_loop.py` (no `-m`) → exit 0
• Two-run reproducibility diff on `experiment.delta` + `result_packet_structural_sha256` → byte-identical
• `grep -rn 'agents/venues.yaml' .` → 0 hits
• `grep -rn 'neurips2025|emnlp2025|iccv2025' .` → 0 hits

Related: #9, #10, #11, #12, #13, #14, #15.

🤖 Generated with Claude Code